AT3G26930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: Protein with RNI-like/FBD-like domains (TAIR:AT4G13965.1); Has 974 Blast hits to 953 proteins in 26 species: Archae - 0; Bacteria - 8; Metazoa - 17; Fungi - 0; Plants - 945; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9925931..9927351 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47009.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVLSKRWRS LWKMLPRLKF DDWMFPDNVN RCLLSHQASF LQSLHLVIDY DFVSHMHTGI LMGIAFGRHI RELVLYVNGF QESFTFPLSL CNCESLETLT 101: LGHNVLIDVP SPVFLKSLRT LHLDGVEYTD DESVVNLLSG CISLENLVVH RVIQADVTTF TIAVPSLKRL TLTTEFDDDE DSVYVINAPS LKYLKILGDK 201: AYLIENSPEL VEVSLTDRQV TVDGYPIASY VENLLRSLTS VKRMSLKISS YLEIKFPTGS IFYQLVSLEL YTNKAEWWNL LVLMLDSSPK LQVLKLNGKL 301: SGENNHLASM NWDQPKNIPG CLLFNLETFI WKGCKRIGED EKEVAKYILR NTNRLKRATF TREIYEENNS QDMFENLEMV EELESVVRAS KSCKLVFEST 401: LWSLSNYDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)