AT3G26855.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.837 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-directed DNA polymerase (reverse transcriptase)-related family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-directed DNA polymerase (reverse transcriptase)-related family protein; CONTAINS InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 202 Blast hits to 202 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 201; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9898680..9899350 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 18481.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||
| Length | 163 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNNWIGDIW SLKISPKIKL LIWKALNNAL PVGAQLLSRN ISIEPFCTRC RDFETITHIL FNCPFAQREV IMKSIIDAKE WQTAQQMGSM LGSTPSLFPR 101: IHDERTPCNP ICLSCNPMLL STFPSIVRAW DGKSSPKLRD HTPNTLLLAI MCYLRYLSLT TGS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)