AT3G26630.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT2G42920.1); Has 33140 Blast hits to 12409 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 38; Plants - 32761; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:9791572..9792939 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 51226.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAAPSPSSPP NLLSPPPFRS PEASYFLRTC SNFSQLKQIH TKIIKHNLTN DQLLVRQLIS VSSSFGETQY ASLVFNQLQS PSTFTWNLMI RSLSVNHKPR 101: EALLLFILMM ISHQSQFDKF TFPFVIKACL ASSSIRLGTQ VHGLAIKAGF FNDVFFQNTL MDLYFKCGKP DSGRKVFDKM PGRSIVSWTT MLYGLVSNSQ 201: LDSAEIVFNQ MPMRNVVSWT AMITAYVKNR RPDEAFQLFR RMQVDDVKPN EFTIVNLLQA STQLGSLSMG RWVHDYAHKN GFVLDCFLGT ALIDMYSKCG 301: SLQDARKVFD VMQGKSLATW NSMITSLGVH GCGEEALSLF EEMEEEASVE PDAITFVGVL SACANTGNVK DGLRYFTRMI QVYGISPIRE HNACMIQLLE 401: QALEVEKASN LVESMDSDPD FNSSFGNEYT DGMNETNETP SQHQIMFTKW DTGRF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)