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AT3G26630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT2G42920.1); Has 33140 Blast hits to 12409 proteins in 168 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 38; Plants - 32761; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026648EMBL:AY099658
EMBL:BT000240EMBL:CP002686EMBL:X97487EMBL:X98130
EnsemblPlants:AT3G26630EnsemblPlants:AT3G26630.1entrez:822275Gene3D:1.25.40.10
GeneID:822275Genevisible:Q38959GO:GO:0009507Gramene:AT3G26630.1
hmmpanther:PTHR24015HOGENOM:HOG000115630InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT3G26630OMA:FTWNLMIPaxDb:Q38959Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q38959Pfscan:PS51375
PhylomeDB:Q38959PRIDE:Q38959PRO:PR:Q38959PROSITE:PS51375
ProteinModelPortal:Q38959Proteomes:UP000006548RefSeq:NP_189297.1SMR:Q38959
STRING:3702.AT3G26630.1TAIR:AT3G26630TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.84UniProt:Q38959
Coordinates (TAIR10) chr3:-:9791572..9792939
Molecular Weight (calculated) 51226.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.13
Length 455 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPSPSSPP NLLSPPPFRS PEASYFLRTC SNFSQLKQIH TKIIKHNLTN DQLLVRQLIS VSSSFGETQY ASLVFNQLQS PSTFTWNLMI RSLSVNHKPR
101: EALLLFILMM ISHQSQFDKF TFPFVIKACL ASSSIRLGTQ VHGLAIKAGF FNDVFFQNTL MDLYFKCGKP DSGRKVFDKM PGRSIVSWTT MLYGLVSNSQ
201: LDSAEIVFNQ MPMRNVVSWT AMITAYVKNR RPDEAFQLFR RMQVDDVKPN EFTIVNLLQA STQLGSLSMG RWVHDYAHKN GFVLDCFLGT ALIDMYSKCG
301: SLQDARKVFD VMQGKSLATW NSMITSLGVH GCGEEALSLF EEMEEEASVE PDAITFVGVL SACANTGNVK DGLRYFTRMI QVYGISPIRE HNACMIQLLE
401: QALEVEKASN LVESMDSDPD FNSSFGNEYT DGMNETNETP SQHQIMFTKW DTGRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)