suba logo
AT3G26540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 45842 Blast hits to 12891 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 71; Plants - 45205; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB028611EMBL:CP002686
EnsemblPlants:AT3G26540EnsemblPlants:AT3G26540.1entrez:822262GeneID:822262
Genevisible:Q9LRV2Gramene:AT3G26540.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF72
HOGENOM:HOG000083802InParanoid:Q9LRV2InterPro:IPR002885iPTMnet:Q9LRV2
KEGG:ath:AT3G26540OMA:WNVIVRRPaxDb:Q9LRV2Pfam:PF01535
Pfam:PF13041Pfam:Q9LRV2Pfscan:PS51375PhylomeDB:Q9LRV2
PRIDE:Q9LRV2PRO:PR:Q9LRV2PROSITE:PS51375ProteinModelPortal:Q9LRV2
Proteomes:UP000006548RefSeq:NP_189286.1SMR:Q9LRV2STRING:3702.AT3G26540.1
TAIR:AT3G26540TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65162
UniProt:Q9LRV2
Coordinates (TAIR10) chr3:-:9744542..9746644
Molecular Weight (calculated) 79199.20 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.00
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTGVSSAF GRLFKQDKTH KRVIGTGTKL TVTRQILEHL EGGNVSKAVS VLFASPEPVS YWLYERLFRS CSSKALVVQA RKVQSHLVTF SPLPPIFLLN
101: RAIEAYGKCG CVDDARELFE EMPERDGGSW NAVITACAQN GVSDEVFRMF RRMNRDGVRA TETSFAGVLK SCGLILDLRL LRQLHCAVVK YGYSGNVDLE
201: TSIVDVYGKC RVMSDARRVF DEIVNPSDVS WNVIVRRYLE MGFNDEAVVM FFKMLELNVR PLNHTVSSVM LACSRSLALE VGKVIHAIAV KLSVVADTVV
301: STSVFDMYVK CDRLESARRV FDQTRSKDLK SWTSAMSGYA MSGLTREARE LFDLMPERNI VSWNAMLGGY VHAHEWDEAL DFLTLMRQEI ENIDNVTLVW
401: ILNVCSGISD VQMGKQAHGF IYRHGYDTNV IVANALLDMY GKCGTLQSAN IWFRQMSELR DEVSWNALLT GVARVGRSEQ ALSFFEGMQV EAKPSKYTLA
501: TLLAGCANIP ALNLGKAIHG FLIRDGYKID VVIRGAMVDM YSKCRCFDYA IEVFKEAATR DLILWNSIIR GCCRNGRSKE VFELFMLLEN EGVKPDHVTF
601: LGILQACIRE GHVELGFQYF SSMSTKYHIS PQVEHYDCMI ELYCKYGCLH QLEEFLLLMP FDPPMQMLTR INDACQRYRW SKLGAWAAKR LMNDHYLQPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)