AT3G26490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G67900.3); Has 883 Blast hits to 855 proteins in 28 species: Archae - 0; Bacteria - 1; Metazoa - 5; Fungi - 0; Plants - 875; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9704142..9706161 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66351.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 588 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKFMELGFRP DTFYTVESVR SVSSDLLNDL VIQVKSTKYL LHKFPMLSKC LRLKNLVSSQ ETETSQEQQV IQLVDFPGET EAFELCAKFC YGITITLCAH 101: NVVAVRCAAE YLGMTEEVEL GETENLVQRL ELFLTTCVFK SWRDSYVTLQ TTKVLPLWSE DLGITNRCIE AIANGVTVSP GEDFSTQLET GLLRNRSRIR 201: RDEILCNGGG GSKAESLRWW GEDLAELGLD LYRRTMVAIK SSHRKISPRL IGNALRIYAS KWLPSIQESS ADSNLVLESV ISLLPEEKSS VPCSFLLQLL 301: KMANVMNVSH SSKMELAIKA GNQLDKATVS ELLIPLSDKS GMLYDVDVVK MMVKQFLSHI SPEIRPTRTR TEHRRSRSEE NINLEEIQEV RGSLSTSSSP 401: PPLLSKVAKL VDSYLQEIAR DVNLTVSKFV ELAETIPDTS RICHDDLYNA IDVYLQVHKK IEKCERKRLC RILDCKKLSV EASKKAAQNE LLPLRVIVQI 501: LFVEQARATL ATTRNNITTN ETAVLKRSFT TRREEGGQEE EERDETKPSG GFLQSTPSRF MALCAIPRQP KKLLCKLLSI SRSLSQRI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)