AT3G26350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.933 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9653660..9654730 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 39908.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.91 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSHHHHHETN PHFARIPSQN PHLKSGGAST SQTSSNQPHI PPIPHPKKSH HKTTQPHPVA PPGILIKTRG RHRENPIQEP KHSVIPVPLS PEERLPPRKT 101: QNSSKRPLLL SPEDNQQQRP PPPQAPQRNG GGYGSTLPPI PKPSPWRTAP TPSPHHRRGP RLPPPSRETN AMTWSAAFCC AIFWVILILG GLIILIVYLV 201: YRPRSPYVDI SAANLNAAYL DMGFLLNGDL TILANVTNPS KKSSVEFSYV TFELYYYNTL IATQYIEPFK VPKKTSMFAN VHLVSSQVQL QATQSRELQR 301: QIETGPVLLN LRGMFHARSH IGPLFRYSYK LHTHCSVSLN GPPLGAMRAR RCNTKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)