AT3G26180.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 71, subfamily B, polypeptide 20 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
putative cytochrome P450 | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 71, subfamily B, polypeptide 20 (CYP71B20); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily B, polypeptide 19 (TAIR:AT3G26170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9578407..9579993 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41708.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.72 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||
| Length | 368 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAISFLCFCL ITLASLIFFA KKIKHLKWNL PPSPPKFPVI GNLHQIGELP HRSLQHLAER YGPVMLLHFG FVPVTVVSSR EAAEEVLRTH DLDCCSRPKL 101: VGTRLLSRNF KDLDALFQHV IDDHLNPGRS KEHEDIIDSM LDAIHKEGKD SSLELIIDHI KGFLANIFLA GIDTGALTMI WAMTELVKNP KLIKKVQGEI 201: REQLGSNKAR ITEEDIDKVP YLKMVIKETF RLHPAAPLIL PRETMAHIKV QGYDIPPKRR ILVNVSAIGR DPKLWTNPEE FDPERFMDSS VDYRGQHYEL 301: LPFGSGRRIC PGMPMGIAAV ELGLLNLLYF FDWKLPDGMT HKDIDTEEAG TLTIVKKVPL QLVPVRVQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)