AT3G26140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.517 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cellulase (glycosyl hydrolase family 5) protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cellulase (glycosyl hydrolase family 5) protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Cellulase (glycosyl hydrolase family 5) protein (TAIR:AT1G13130.1); Has 359 Blast hits to 351 proteins in 117 species: Archae - 8; Bacteria - 143; Metazoa - 0; Fungi - 82; Plants - 110; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9559742..9563070 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56549.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 508 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAYPLSTNSR WIIDEKGQRV KLACVNWPSH LQPVVAEGLS KQSVDDLAKK IMAMGFNCVR FTWPLDLATN ETLANNVTVR QSFQSLGLND DISGFETKNP 101: SMIDLPLIEA YKKVVAKLGN NNVMVILDNH VTKPGWCCGY NDGNGFFGDT FFDPTTWIAG LTKIAMTFKG ATNVVGMSLR NELRGPKQNV DDWFKYMQQG 201: AEAVHEANPN VLVILSGLSY DTDLSFVRSR HVNLTFTRKL VFELHRYSFT NTNTWSSKNP NEACGEILKS IENGGGFNLR DFPVFLSEFG IDLRGKNVND 301: NRYIGCILGW AAENDVDWSI WTLQGSYYLR EGVVGMSEFY GILDSDWVRV RSQSFLQRLS LILSPLQGPG SQSKVYNLVF HPLTGLCMLQ SILDPTKVTL 401: GLCNESQPWS YTPQNTLTLK DKSLCLESTG PNAPVKLSET SCSSPNLSEW ETISASNMLL AAKSTNNSLC LDVDETNNLM ASNCKCVKGE DSSCDPISQW 501: FKIVKVSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)