AT3G26010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.809 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G22430.1); Has 530 Blast hits to 526 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 530; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9511901..9513145 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47344.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 414 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METRNRTIHL TDAIWTEILA RLPLRIIARF KSVSKTWKST IESVYFRRLF VSVHRKSSTS WSLMWYGQKD LVGFHGCETW GLPKSLSFYI PSSLCIIEGS 101: SHGLVLISEN DDDCCFVGNP VLQQWIKIPP PPVHSSVFGL VSRVDDDGFV LGFKVVKLAE VIVTNNYVSC SLSVFVYSSE TGIWTCKTIH CPYQITNFGS 201: FTLDGTIYFD HLSEPGVLVA YDFYSEISDQ FWVIPLPDHP NHGFNSDFKG ALTTSQGFVM YIRTLAQSSS NVFKAWRLNN DSTWQLLWKI GLPSLIGDYV 301: PMAMHPFDSD IVHLWSQDHR HVVSWNLRTQ KNRILGAEDN DEDHKDCYLN QPVCEECMDE ICGCKASVRL LQLVLPRWME SVPCPPQVEM MNTASVISYV 401: TSMQETMIRN WLHQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)