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AT3G25620.2
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ATP-binding cassette 14 (TAIR:AT1G31770.1).
Protein Annotations
BioGrid:7480eggNOG:COG1131eggNOG:KOG0061EMBL:AP001313
EMBL:AY064994EMBL:BT010173EMBL:CP002686EnsemblPlants:AT3G25620
EnsemblPlants:AT3G25620.2entrez:822149Gene3D:3.40.50.300GeneID:822149
Genevisible:Q7XA72GO:GO:0005524GO:GO:0006810GO:GO:0016021
GO:GO:0016887hmmpanther:PTHR19241hmmpanther:PTHR19241:SF303HOGENOM:HOG000046080
InParanoid:Q7XA72InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT3G25620ncoils:Coil
OMA:HLTVMETPaxDb:Q7XA72Pfam:PF00005Pfam:PF01061
Pfam:Q7XA72Pfscan:PS50893PhylomeDB:Q7XA72PRIDE:Q7XA72
PRO:PR:Q7XA72PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q7XA72
Proteomes:UP000006548Reactome:R-ATH-917937RefSeq:NP_001189973.1RefSeq:NP_189190.2
scanprosite:PS00211SMART:SM00382SMR:Q7XA72STRING:3702.AT3G25620.2
SUPFAM:SSF52540TAIR:AT3G25620TMHMM:TMhelixUniGene:At.28290
UniGene:At.67321UniProt:Q7XA72
Coordinates (TAIR10) chr3:-:9316677..9319505
Molecular Weight (calculated) 75273.70 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.02
Length 672 amino acids
Sequence (TAIR10)
(BLAST)
001: MMPPNEQESS FPKTPSANRH ETSPVQENRF SSPSHVNPCL DDDNDHDGPS HQSRQSSVLR QSLRPIILKF EELTYSIKSQ TGKGSYWFGS QEPKPNRLVL
101: KCVSGIVKPG ELLAMLGPSG SGKTTLVTAL AGRLQGKLSG TVSYNGEPFT SSVKRKTGFV TQDDVLYPHL TVMETLTYTA LLRLPKELTR KEKLEQVEMV
201: VSDLGLTRCC NSVIGGGLIR GISGGERKRV SIGQEMLVNP SLLLLDEPTS GLDSTTAARI VATLRSLARG GRTVVTTIHQ PSSRLYRMFD KVLVLSEGCP
301: IYSGDSGRVM EYFGSIGYQP GSSFVNPADF VLDLANGITS DTKQYDQIET NGRLDRLEEQ NSVKQSLISS YKKNLYPPLK EEVSRTFPQD QTNARLRKKA
401: ITNRWPTSWW MQFSVLLKRG LKERSHESFS GLRIFMVMSV SLLSGLLWWH SRVAHLQDQV GLLFFFSIFW GFFPLFNAIF TFPQERPMLI KERSSGIYRL
501: SSYYIARTVG DLPMELILPT IFVTITYWMG GLKPSLTTFI MTLMIVLYNV LVAQGVGLAL GAILMDAKKA ATLSSVLMLV FLLAGGYYIQ HIPGFIAWLK
601: YVSFSHYCYK LLVGVQYTWD EVYECGSGLH CSVMDYEGIK NLRIGNMMWD VLALAVMLLL YRVLAYLALR NL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)