AT3G25430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G55870.1); Has 339 Blast hits to 335 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 154; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:9221204..9223700 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68810.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 618 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQRRFLSSIS ATAGNTKTLN QGRWSVKQVK KSNFHVTLDE IRTSIDSSDF IALSLQNTGS YAAAWHRVSA IDTPQTSYLK AKYAAERYQI LQFALCPFSL 101: QGSKLTVHPY NFHLFPRDEL KCGMPSYSFS CQASRLTAMA REGFDFNICI YEGISYLSRA QESASKFLSE NPILADSVTV SSSPATVADT VFVGRIRSRV 201: KNWRQSCIDS GSKTGDDDLV SSLRRLVLGS EQYGSRLCLT IDVCSERQVQ LILEMLTEFS DDVVPLLVAS KSRGTQAVRT VFMSSKEDKD LFKRELKDLE 301: KEENRRVRGF REVVDFISSS QKPVVSQNYL SDFTSIHAKF LGPLPSNVDD FSSSLSSAFP NVVDLSQFMK EISPLSNISN LPAAMSSLNR FFAPVDVEVA 401: NQGCPVKLDE GHQSHGQNAV MISQLFAKLC TIQKSDLSTI QSNEDFQALA SDEHANSVTS CSKNAGDENV KVWSKNSRRV SSENLVFIWG LGKKMTAAKL 501: KNVLQKSHPV FAREFDVKYI DRSSAILVFW ESGPSETFLS AVNNEEQLDG SLREMVAEGL RGAGYETYKR ACRLGFWEAD LAESLDKALE SSDTDPDSDT 601: KPSEIDWSNE LAINFDEL |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)