AT3G25270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease H-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G04420.1); Has 1562 Blast hits to 1555 proteins in 146 species: Archae - 20; Bacteria - 208; Metazoa - 1; Fungi - 0; Plants - 1330; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9203934..9204965 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40585.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.97 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||
| Length | 343 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPEIQPPPG KAEIKAKIWK LKTAPKIKHF LWKLLSGALA TGDNLKRRHI RNHPQCHRCC QEDETSQHLF FDCFYAQQVW RASGIPHQEL RTTGITMETK 101: MELLLSSCLA NRQPQLFNLA IWILWRLWKS RNQLVFQQKS ISWQNTLQRA RNDVQEWEDT NTYVQSLNQQ VHSSRHQQPT MARTKWQRPP STWIKYNYDG 201: AFNHQTRNAK AGWLMRDENG VYMGSGQAIG STTSDSLESE FQALIIAMQH AWSQGYRKVI FEGDSKQVEE LMNNEKLNFG RFNWIREGRF WQKRFEEAVF 301: KWVPRTNNQP ADILAKHHLQ PNQSFKFHYY VPAFITSTLY YDH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)