AT3G25130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9152434..9153654 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 46524.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSELALSSQE ESPSSNKIGL SSLLLSDFHL FCSFILTHPF YFSYLLFFSP YIFKILSFLS PLFVTTTLLL LALLSTLHVQ DTCLDSESLE TQPSFLFSFC 101: SKLGSVLEHK FDVNNEGFKS LEELEAYKMV VEACSMECAS ENEICSDELT FVDKFCSHES TVSESLTDET LEEQVEIQPL KFEDVIVLEK EEETKKCEKE 201: EVEEQKVKHK SDVVLDNREE PTKEESKAQK VDLVGDSNNE SYDLPKLSNF LGEGEGKRNV VTKNEEEDNV SLQSFGSMRK EKEWRRTLAC KLFEERHNAD 301: VGQGMDQLWE TYETQTEKKQ QTEEEKKKLK KKTKSMMKTK SIEKEVIVEE EDDDGIDHQQ LCCLQALKFS TGKMHLGIAR PNLLKLSKAF KGIGRFYNAN 401: KHSKKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)