AT3G24982.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 40 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 40 (RLP40); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sepal, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 42 (TAIR:AT3G25020.1); Has 99455 Blast hits to 28572 proteins in 1045 species: Archae - 41; Bacteria - 5981; Metazoa - 21246; Fungi - 1128; Plants - 63748; Viruses - 31; Other Eukaryotes - 7280 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9106157..9108937 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101295.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 915 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQNHILSLFI PIFSLTFLIS KSILSFKAVF IMSELLFSLN FLLLLLLSCV SPSSFFTFNN PVVGLGACGP HQIQAFTQFK NEFDTRACNH SDPWNGVWCD 101: DSTGAVTMLQ LRACLSGTLK PNSSLFQFHH LRSLLLPHNN FTSSSISSKF GMLNNLEVLS LSSSGFLAQV PFSFSNLSML SALVLSNNDL TGSLSFARNL 201: RKLRVLDVSY NHFSGILNPN SSLFELHHII YLNLRYNNFT SSSLPYEFGN LNKLEVLDVS SNSFFGQVPP TISNLTQLTE LYLPLNHFTG SLPLVQNLTK 301: LSILHLFGNH FSGTIPSSLF TMPFLSYLSL KGNNLNGSIE VPNSSSSSRL ESLHLGENHF EGKILEPISK LINLKELDLS FLNTSYPIDL SLFSSLKSLL 401: LLDLSGDWIS KASLTLDSYI PSTLEVLRLE HCDISDFPNV FKTLHNLEYI ALSNNRISGK FPEWLWSLPR LSSVFITDNL LTGFEGSSEV LVNSSVQILS 501: LDTNSLEGAL PHLPLSINYF SAIDNRFGGD IPLSICNRSS LDVLDLSYNN FTGPIPPCLS NLLYLKLRKN NLEGSIPDKY YEDTPLRSLD VGYNRLTGKL 601: PRSLINCSAL QFLSVDHNGI KDTFPFSLKA LPKLQVLLLS SNKFYGPLSP PNEGPLGFPE LRILEIAGNK LTGSFLSSDF FVNWKASSHT MNEDLGLYMV 701: YGKVIFGNYH LTYYETIDLR YKGLSMEQRN VLTSSATIDF SGNRLEGEIP ESIGLLKALI ALNLSNNAFT GHIPLSFANL KKMESLDLSS NQLSGTIPNG 801: LRTLSFLAYV NVSHNQLIGE IPQGTQITGQ PKSSFEGNAG LCGFPLQESC FGTNTPPAQH PKEQEEEEED EQVLNWKAVA IGYGIGVLLG LAIAQLISLY 901: KPKWLASLVI KSRNC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)