AT3G24900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 39 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 39 (RLP39); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 41 (TAIR:AT3G25010.1); Has 100467 Blast hits to 28160 proteins in 1059 species: Archae - 45; Bacteria - 6030; Metazoa - 21147; Fungi - 1159; Plants - 64382; Viruses - 14; Other Eukaryotes - 7690 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9099183..9101837 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97454.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 884 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSELLFRLNF LLLLLLSCVS LASSFFSFND PVVGLGACGP HQIQAFTQFK NEFDTHACNH SDSLNGVWCD NSTGAVMKLR LRACLSGTLK SNSSLFQFHQ 101: LRHLYLSYNN FTPSSIPSEF GMLNKLEVLF MSTGGFLGQV PSSFSNLSML SALLLHHNEL TGSLSFVRNL RKLTILDVSH NHFSGTLNPN SSLFELHNLA 201: YLDLGSNNFT SSSLPYEFGN LNKLELLDVS SNSFFGQVPP TISNLTQLTE LYLPLNDFTG SLPLVQNLTK LSILHLSDNH FSGTIPSSLF TMPFLSYLDL 301: GGNNLSGSIE VPNSSLSSRL ENLNLGENHF EGKIIEPISK LINLKELHLS FLNTSYPINL KLFSSLKYLL LLDLSGGWIS QASLSLDSYI PSTLEALLLK 401: HCNISVFPNI LKTLPNLEFI ALSTNKISGK IPEWLWSLPR LSSVFIEENL FTGFEGSSEI LVNSSVRILN LLSNNLEGAL PHLPLSVNYF SARNNRYGGD 501: IPLSICSRRS LVFLDLSYNN FTGPIPPCPS NFLILNLRKN NLEGSIPDTY YADAPLRSLD VGYNRLTGKL PRSLLNCSAL QFLSVDHNGI KDTFPFSLKA 601: LPKLQVLILH SNNFYGPLSP PNQGSLGFPE LRILEIAGNK FTGSLPPDFF ENWKASSLTM NEDQGLYMVY NKVVYGTYYF TSLEAIDLQY KGLSMEQNRV 701: LSSSATIDFS GNRLEGEIPE SIGLLKALIA LNLSNNAFTG HIPLSLANLK KIESLDLSSN QLSGTIPNGI GTLSFLAYMN VSHNQLNGEI PQGTQITGQP 801: KSSFEGNAGL CGLPLQESCF GTNAPPAQHP KEEEEEEEEE EQVLNWKGVG IGYGVGVLLG LAIAQLIASY KPEWLVFLFQ SRNH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)