AT3G24700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.966 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G17265.1); Has 1460 Blast hits to 1430 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1460; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr3:+:9022281..9023030 | ||||||||||||
| Molecular Weight (calculated) | 28824.70 Da | ||||||||||||
| IEP (calculated) | 9.56 | ||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||
| Length | 249 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLTDLPLDLE SEILSRVPAT SLQRLKTTCK RWYALFRDPR FVKKNLGKAA THVIFDNRSG YSMTDINSLI HSINLRGIQN SFDPSIGVDV KLNVLKDPRH 101: DKISHIISHC DGLLLCKTED YGRLVVWNPC TGQIKWIQAN NMLMDVYVLG YVNNNKSCNS YKILNFGILP LNSSHDNKSK IYEFNSDSWR ILDHVSPGYF 201: AISKAMTLKG NAYWFASDWY ASDKERKFLH KFDFRSERFG RLCIPIQKY |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)