AT3G24600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.472 plasma membrane 0.444 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant protein, group 2 | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant protein, group 2; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 347 Blast hits to 183 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 347; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8972195..8974867 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 55179.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.07 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 506 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMYPKSDSD VTSLDLSSPK RPTYYVQSPS RDSDKSSSVA LTTHQTTPTE SPSHPSIASR VSNGGGGGFR WKGRRKYHGG IWWPADKEEG GDGRYEDLYE 101: DNRGVSIVTC RLILGVVATL SIFFLLCSVL FGASQSSPPI VYIKGVNVRS FYYGEGSDNT GVPTKIMNVK CSVVITTHNP STLFGIHVSS TAVSLIYSRQ 201: FTLANARLKS YHQPKQSNHT SRINLIGSKV PLYGAGAELV ASDNSGGVPV HTPNYTILSE SRLSSSSRTS NGTSGMGFRW KGSSRRSNMY WPEKPYTINE 301: DEVYDDNRGL SVGQCRAVLV ILGTVVVFSV FCSVLWGASH PFSPIVSVKS VDIHSFYYGE GIDRTGVATK ILSFNSSVKV TIDSPAPYFG IHVSSSTFKL 401: TFSALTLATG QLKSYYQPRK SKHISIVKLT GAEVPLYGAG PHLAASDKKG KVPVKLEFEI RSRGNLLGKL VKSKHENHVS CSFFISSSKT SKPIEFTHKT 501: CKLVTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)