AT3G24260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28870.1); Has 220 Blast hits to 218 proteins in 65 species: Archae - 7; Bacteria - 6; Metazoa - 43; Fungi - 2; Plants - 115; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8793837..8794961 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43856.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.98 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADADELMKT NGVKTQSSSV QTRLRSSVRL LRNPELTREL RRLKDNNLNR KIDHDEKPEE NPILLNEPKM IPRIRIVYKP KDDVERKMKD RLEAKQKLTE 101: LLKAIEERLT RSELRVYTCL CKDFKSHRID YSQFVKSLQR LIDKYKNLYQ RFVDIAYGHG EDEAGTRVKV DDNPQDTESD KIKLEGKGKR GMLPPKESDQ 201: PERPLKKRRK TERATPNYKL IPKEEQTPVS STVLNNTWVV NSYDIQAQKN LTDIEKDMYN WEDQMFELDM LVGFLTSAAK NAEEVINGER DLKDLGGKFY 301: RCAENLYGRD MLEIVKENHQ RVLPAILNRL NQKLREVTLV RERLKPVLKQ TIEKLSTRQR GSTAQESQVK TRTI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)