AT3G23330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 38045 Blast hits to 13879 proteins in 261 species: Archae - 0; Bacteria - 10; Metazoa - 50; Fungi - 109; Plants - 37267; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8347200..8349347 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80063.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 715 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSKALIKT LIKNPTRIKS KSQAKQLHAQ FIRTQSLSHT SASIVISIYT NLKLLHEALL LFKTLKSPPV LAWKSVIRCF TDQSLFSKAL ASFVEMRASG 101: RCPDHNVFPS VLKSCTMMMD LRFGESVHGF IVRLGMDCDL YTGNALMNMY AKLLGMGSKI SVGNVFDEMP QRTSNSGDED VKAETCIMPF GIDSVRRVFE 201: VMPRKDVVSY NTIIAGYAQS GMYEDALRMV REMGTTDLKP DSFTLSSVLP IFSEYVDVIK GKEIHGYVIR KGIDSDVYIG SSLVDMYAKS ARIEDSERVF 301: SRLYCRDGIS WNSLVAGYVQ NGRYNEALRL FRQMVTAKVK PGAVAFSSVI PACAHLATLH LGKQLHGYVL RGGFGSNIFI ASALVDMYSK CGNIKAARKI 401: FDRMNVLDEV SWTAIIMGHA LHGHGHEAVS LFEEMKRQGV KPNQVAFVAV LTACSHVGLV DEAWGYFNSM TKVYGLNQEL EHYAAVADLL GRAGKLEEAY 501: NFISKMCVEP TGSVWSTLLS SCSVHKNLEL AEKVAEKIFT VDSENMGAYV LMCNMYASNG RWKEMAKLRL RMRKKGLRKK PACSWIEMKN KTHGFVSGDR 601: SHPSMDKINE FLKAVMEQME KEGYVADTSG VLHDVDEEHK RELLFGHSER LAVAFGIINT EPGTTIRVTK NIRICTDCHV AIKFISKITE REIIVRDNSR 701: FHHFNRGNCS CGDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)