AT3G23270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.990 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT4G14368.1); Has 25157 Blast hits to 10467 proteins in 596 species: Archae - 58; Bacteria - 2385; Metazoa - 9739; Fungi - 1750; Plants - 3215; Viruses - 10; Other Eukaryotes - 8000 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:8316436..8320337 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114199.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1045 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTRFLR PEKDHLSFSL LYNNRERSLD 0101: LICKDKAETE VWFAALKFLI EKSRNRRARS EIPEIHDSDT FSVGRQSIDF VPSNIPRGRT SIDLGYQNNS DVGYERGNML RPSTDGFRIS VSSTPSCSSG 0201: GSGPDDIESL GDVYVWGEVW TEGILPDGTA SNETVKTDVL TPRPLESNVV LDVHQIVCGV RHVALVTRQG EVFTWGEEVG GRLGHGIQVD ISRPKLVEFL 0301: ALTNIDFVAC GEYHTCVVST SGDLFSWGDG IHNVGLLGHG SDISHWIPKR VSGPLEGLQV LSVACGTWHS ALATANGKLF TFGDGAFGVL GHGNRESVSY 0401: PKEVQSLNGL KTVKVACSIW HTAAIVEVMG QTATSMSSRK LFTWGDGDKN RLGHGNKETY LLPTCVSSLI DYNFHKIACG HTFTVALTTS GHVFTMGGTA 0501: HGQLGNSISD GKLPCLVQDR LVGEFVEEIA CGAHHVAVLT SRSEVFTWGK GANGRLGHGD TEDKRTPTLV EALRDRHVKS LSCGSNFTSS ICIHKWVSGA 0601: DQSICSGCRQ AFGFTRKRHN CYNCGLVHCH ACSSKKALKA ALAPTPGKPH RVCDACYSKL KAAESGYSSN VNRNVATPGR SIDGSVRTDR ETTRSSKVLL 0701: SANKNSVMSS SRPGFTPESS NARASQVPSL QQLKDIAFPS SLSAIQNAFK PVVAPTTTPP RTLVIGPSSP SPPPPPRSSS PYARRPSPPR TSGFSRSVID 0801: SLRKTNEVMN QEMTKLHSQQ RCNNQGTEIE RFQKAAKDAS ELAARQSSKH KAATEALKSV AEQLKELKEK LPPEVSESEA FESINSQAEA YLNANKVSET 0901: SPLTTSGQEQ ETYQKTEEQV PSNSSITETS SSSRAPSTEA SSSRISGKES KEQFEPGVYV TYEVDMNGNK IFRRVRFSKK RFDEHQAEDW WTKNKDRLLK 1001: CYSSNSSSSS SSSNPTASDS PVAPQPPSDP SVPEQSNEKE PDSET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)