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AT3G22840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Encodes an early light-inducible protein.
Computational
Description (TAIR10)
EARLY LIGHT-INDUCABLE PROTEIN (ELIP1); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G14690.1); Has 319 Blast hits to 319 proteins in 50 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
BioGrid:7187eggNOG:ENOG410IX81eggNOG:ENOG410Y0RGEMBL:AB022223
EMBL:AY057560EMBL:AY075672EMBL:AY085317EMBL:AY097423
EMBL:CP002686EMBL:U89014EnsemblPlants:AT3G22840EnsemblPlants:AT3G22840.1
entrez:821855GeneID:821855Genevisible:P93735GO:GO:0009409
GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0010030
GO:GO:0010117GO:GO:0010380GO:GO:0015979GO:GO:0016021
GO:GO:0034605GO:GO:0071483GO:GO:0071486GO:GO:0071490
GO:GO:0071491GO:GO:0071492GO:GO:0080167Gramene:AT3G22840.1
hmmpanther:PTHR14154hmmpanther:PTHR14154:SF5HOGENOM:HOG000237710InParanoid:P93735
InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT3G22840OMA:YPVGVRC
PaxDb:P93735Pfam:P93735Pfam:PF00504PhylomeDB:P93735
PRIDE:P93735PRO:PR:P93735ProteinModelPortal:P93735Proteomes:UP000006548
RefSeq:NP_188923.1SMR:P93735STRING:3702.AT3G22840.1SUPFAM:0043399
SUPFAM:SSF103511TAIR:AT3G22840tair10-symbols:ELIPtair10-symbols:ELIP1
UniGene:At.20776UniProt:P93735
Coordinates (TAIR10) chr3:-:8084628..8085445
Molecular Weight (calculated) 20325.70 Da
IEP (calculated) 10.38
GRAVY (calculated) 0.15
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASFNMQS VFAGGLTTRK INTNKLFSAG SFPNLKRNYP VGVRCMAEGG PTNEDSSPAP STSAAQPLPK SPSPPPPMKP KVSTKFSDLL AFSGPAPERI
101: NGRLAMVGFV AALAVELSKG ENVLAQISDG GVSWFLGTTA ILTLASLVPL FKGISVESKS KGIMTSDAEL WNGRFAMLGL VALAFTEFVK GGTLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)