AT3G22270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Topoisomerase II-associated protein PAT1 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Topoisomerase II-associated protein PAT1; BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT4G14990.1); Has 263 Blast hits to 260 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 15; Plants - 121; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7874480..7877857 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85650.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.55 | ||||||||||||||||||||||||||||
| Length | 782 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERSDSRDLY NFVRASSLDK NSTLFDASQY EFFGQNLDDM ELGGLDDDGV IAPVLGHADD DEYHLFDKGE GAGLGSLSDM DDLATTFAKL NRVVTGPKHP 101: GVIGDRGSGS FSRESSSATD WTQDAELTSW LDEQDQEAKR WSSQPQSFAH SKPLYRTSSY PQQQPQLQHY NSEPIILPES NFTSFPPPGN RSPQASPGNL 201: HRAPSLPGGS QLTYSAPSPL SNSGFHLSGL SQGPHYGGNL TRYASCGPTL GNMVQPHWVT DPGHLHGDHS GLLHNLVQQQ HQQLPPRNAI MSQHLLALQQ 301: RQSYAQLAAL QSQLYSSYPS PSRKVPFGVG EVREHKHKSS HRSRKNRGLS QQTSDAASQK SETGLQFRSK HMTSEEIESI LKMQHSNSHS NDPYVNDYYH 401: QAKLAKKSAG SKAISHFYPA QLKDHQPRSR NSSEQHPQVH VDALGKITLP SVRRPHALLE VDSSPGFNDG SGDHKGSGKH LEQEPLVAAR VTIEDALGVL 501: IDIVDIDRTL QNTRPQDGGA QLKRKRQILL EGLATALQLA DPFSKTGQKS GMTAKDDIVF LRIATLPKGR KLLTKYLQLL VPGTENARVV CMAIFRHLRF 601: LFGGLPSDTL AAETISNLAK AVTVCVQAMD LRALSACLAA VVCSSEQPPL RPIGSSAGDG ASVVLISLLE RAAEVVVVPR VMHGNSNDGL WRASFDEFFN 701: LLTKYCRSKY DTIRGQNQGS AADVLELAIK REMPAELLRA SLRHTNDDQR NYLLNFGRKP SAISESASHA RGGQINSESV RG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)