AT3G22200.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense. | ||||||||||||
| Computational Description (TAIR10) |
POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7835457..7838863 | ||||||||||||
| Molecular Weight (calculated) | 56368.00 Da | ||||||||||||
| IEP (calculated) | 8.43 | ||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||
| Length | 513 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPTIVNKNLI FFQNAKLTWI RMKKVHLHSK YATCMSGNST SRRIFTTEAA PEKKNTVGSK GHDMLAPFTA GWQSADLDPL VIAKSEGSYV YDDTGKKYLD 101: SLAGLWCTAL GGNEPRLVSA AVEQLNTLPF YHSFWNRTTK PSLDLAKVLL EMFTANKMAK AFFTSGGSDA NDTQVKLVWY YNNALGRPEK KKFIARKKSY 201: HGSTLISASL SGLPPLHQNF DLPAPFVLHT DCPHYWRFHL PGETEEEFST RLAKNLEDLI IKEGPETIGA FIAEPVMGAG GVIPPPATYF EKVQAVVKKY 301: DILFIADEVI CAFGRLGTMF GCDKYNIKPD LVTLAKALSS AYMPIGAILM SQEVADVINS HSSKLGVFSH GFTYSGHPVS CAVAIEALKI YKERNIPEYV 401: AKVAPRFQDG VKAFASGSPI IGETRGTGLI LGTEFVDNKS PNEPFPPEWG VGAFFGAECQ KHGMLVRVAG DGILMSPPLI ISPEEIDELI SIYGKALKAT 501: EEKVKELKAQ HKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)