AT3G22120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.500 plasma membrane 0.500 ASURE: extracellular,plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cell wall-plasma membrane linker protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
cell wall-plasma membrane linker protein homolog (CWLP) | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cell wall-plasma membrane linker protein (CWLP); FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 335678 Blast hits to 95375 proteins in 3349 species: Archae - 1485; Bacteria - 89074; Metazoa - 114820; Fungi - 40290; Plants - 34776; Viruses - 9272; Other Eukaryotes - 45961 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7795283..7796287 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34671.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 334 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSRSQNLSF LVLLLLGFVA VSYACDCTPP KPSPAPHKPP KHPVKPPKPP AVKPPKPPAV KPPTPKPPTV KPHPKPPTVK PHPKPPTVKP HPKPPTVKPP 101: HPKPPTKPHP HPKPPIVKPP TKPPPSTPKP PTKPPPSTPK PPTTKPPPST PKPPHHKPPP TPCPPPTPTP TPPVVTPPTP TPPVITPPTP TPPVVTPPTP 201: TPPVITPPTP TPPVITPPTP TPPVVTPPTP TPPVVTPPTP TPPTPIPETC PIDTLKLGAC VDVLGGLIHI GLGKSHAKAE CCPVLGGLLD LDAAVCLCTT 301: IKLKLLNIDL VLPIALELLL DCGKTPPSDF KCPA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)