AT3G22080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.628 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G15710.1); Has 1512 Blast hits to 790 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 18; Plants - 1379; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7777818..7781718 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74473.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSTVLDANP STLREHPPSS YSIKFENIAE LDDGKYESSL FAAGGYNWRL VIYPKGNAKD EGSGFISMYV EIDSTNLLSS PLTGVFAYLV FFVYNKKTDK 101: YFTIKGLYIS NIFHIYIDLL LVCFPFSIHS LLVFFTHRQF MHDVIDSELK RFNAFRTGDQ CEFGVDVLVA PSLTKWEVVS FNQKILDPKF SWSLKKFKEL 201: KEELYNSDKF LVGGRQWFLK VHPKGVKARD NSLSIYVYLS ESETLNAEEK IYTRVHLRVL DPFGSIHQAG QCNFWRTNTN KNQGYGWPTF ASLDKVREKY 301: LDNEGSLNIE IEFAVVSSTK YSPILILSSL ASGSMMCSSV SSTTLRSWRE RTPNSYSLKL QNISQVEKST LFSDGKYQSR LFSSGGYNWR MIIYPKGNRK 401: DDGSGFISMY VEIDSTSLLT TPTTEVFADL RFFVFNKKEN KYYTIQHVES KLFNAFRTIW GLAQVLPVDT FTDPKNGYIF EGDQCEFGVD VIVAAPPTNW 501: EIHTLHEALS QPKFFWTVKN FSELNNNVYT SGNFSMRERK WVLKLYPKGD VKGDRKWLSL YLYLDQSETL KESEKIFVQA QLRVLDPRGS NHVTHKISSW 601: YTSSNTAWGY RKFVSLAEIP KAYLDKDTLK VQIDVEVVSE AEFSPSMI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)