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AT3G22050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.944
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF26)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Domain of unknown function (DUF26); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G22040.1); Has 1312 Blast hits to 1288 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB028622EMBL:CP002686EnsemblPlants:AT3G22050EnsemblPlants:AT3G22050.1
entrez:821765GeneID:821765Genevisible:Q9LRK2GO:GO:0005576
Gramene:AT3G22050.1hmmpanther:PTHR32411hmmpanther:PTHR32411:SF42HOGENOM:HOG000116552
InParanoid:Q9LRK2InterPro:IPR002902KEGG:ath:AT3G22050OMA:RCQRNKG
PaxDb:Q9LRK2Pfam:PF01657Pfam:Q9LRK2Pfscan:PS51473
PhylomeDB:Q9LRK2PRIDE:Q9LRK2PRO:PR:Q9LRK2PROSITE:PS51473
ProteinModelPortal:Q9LRK2Proteomes:UP000006548RefSeq:NP_188843.2STRING:3702.AT3G22050.1
TAIR:AT3G22050UniGene:At.53434UniProt:Q9LRK2
Coordinates (TAIR10) chr3:+:7764131..7765143
Molecular Weight (calculated) 29635.90 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.34
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSSYSLSKR LIYVPILAIQ FLLVRSVSSL NLTNEYLNHK CFVSEGKYKH GDKYENNLNV LNKNVLSYDL TSGFLHVSHG EGPDSVTIIL QCRGDSFGSN
101: CRSCYTTAID GFHRRCQRNK GGIIWYDQCF LVISTIKPQL PRKIDFKNTF SMHNPNNVSS EPGSFDKMTR DFLYKLVQKA SYPTVVEHQS TYYAAGEKKL
201: GKRKLYAMMQ CASDILQCKV CLEWCIRELP KCCDGKQGGR ILGMSCNLRY ELYPFLRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)