AT3G21000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Gag-Pol-related retrotransposon family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Gag-Pol-related retrotransposon family protein; BEST Arabidopsis thaliana protein match is: Gag-Pol-related retrotransposon family protein (TAIR:AT3G20980.1); Has 830 Blast hits to 808 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 57; Plants - 743; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7363921..7365138 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 46323.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATANIRDGV VSDQFDYEIW APITKSTLIE QGLWDVVVNG VPQDPSKNPE LAATIQPEEL SKWRDFVVKD AKALQILQSS LTDSVFRKTL SASSAKDVWD 101: LLRKGNEQAT IRRLEQVTIR RLEKQLEDLK MVDKESGSSY LDKALEILER LGRAKLEKSD YEICKNVFTT LSGSFDGLDS MLEELIDVHK MTSKSLVEYF 201: YYRVHESSTE EAIFGLLKDL RLKSKSEKWC GLCYKNNHNQ EDCKFRIHTD KEEKEDEIVV DYRLETVPNL GAKTYDDDIW IIHKMAPINM TPYVKYFTTL 301: DRTFKATVGT VDGTVLLVEG KGDVKIRMKE GKKKTIRNVI FVPGLNRNVL SFGKMVSKRY SISTGMQGEC IVCDRGENKL GDAMWMTDET EMALRLKVIE 401: GKLTY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)