AT3G20850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, leaf; EXPRESSED DURING: LP.02 two leaves visible; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G26070.1); Has 36748 Blast hits to 17031 proteins in 1024 species: Archae - 85; Bacteria - 5675; Metazoa - 11815; Fungi - 3902; Plants - 9537; Viruses - 1288; Other Eukaryotes - 4446 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7304157..7304561 | ||||||||||||||||
| Molecular Weight (calculated) | 14883.90 Da | ||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||
| Length | 134 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSQGISLTL VFLLVTLITL GEANNNRKLL YTYNNYQPQH SPLPSPVYSS PADLPPPPTP VYSPPPADLP PPPTPYYSPP ADLPPPTPIY PPPVAFPPPQ 101: AYQAYYYRKS PPPPPSKYGK VYPPPPAKPW WWLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)