AT3G20760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.855 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nse4, component of Smc5/6 DNA repair complex | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nse4, component of Smc5/6 DNA repair complex; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cotyledon; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: Nse4, component of Smc5/6 DNA repair complex (TAIR:AT1G51130.1); Has 305 Blast hits to 304 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 89; Fungi - 122; Plants - 76; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:7257187..7258891 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42970.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||
| Length | 383 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNSVKWETE LTGDRSRRRE ADESSETPKI VKKEKRSKTV IASLRPQQPP IQEEEEQGIA DRRAIRSQYL ALTHKIKDAK DDLTKIDSNK FNSIINEVEN 101: LHQKVRKPRE QIADAEALLD LTNSVVSSVK SQSAHGGVSP AEFVNALING FGKTSLRIDA DENTQVSMKW KDLGFTVCST VLVSCGCTTM MGPMYSEMKQ 201: RKSRVGNRKR TKPGAGVKPE EVDDTEAEKK SDTDNNMAVM FNILRKNKRV KIENLVLNRK SFAQTAENMF ALSFLVKDGR VEITVDNNGS HFVEPRNAPA 301: ANLVLSGEVA YNHFVLRFDY KDWEPMSKMV AVGEELMPLR ETKVAQDSIE LSRKQGSVIQ EETVVEDSSN MEGDNEDSKN GGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)