AT3G20730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.908 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 41688 Blast hits to 13542 proteins in 246 species: Archae - 0; Bacteria - 10; Metazoa - 149; Fungi - 146; Plants - 40815; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7247095..7248878 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62987.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVVSENYLL SPSLYLKALK LCSYQNVKKQ LLLIHGNSIT NGFCSNLQLK DMLIDLYLKQ GDVKHARKLF DRISKRDVVS WTAMISRFSR CGYHPDALLL 101: FKEMHREDVK ANQFTYGSVL KSCKDLGCLK EGMQIHGSVE KGNCAGNLIV RSALLSLYAR CGKMEEARLQ FDSMKERDLV SWNAMIDGYT ANACADTSFS 201: LFQLMLTEGK KPDCFTFGSL LRASIVVKCL EIVSELHGLA IKLGFGRSSA LIRSLVNAYV KCGSLANAWK LHEGTKKRDL LSCTALITGF SQQNNCTSDA 301: FDIFKDMIRM KTKMDEVVVS SMLKICTTIA SVTIGRQIHG FALKSSQIRF DVALGNSLID MYAKSGEIED AVLAFEEMKE KDVRSWTSLI AGYGRHGNFE 401: KAIDLYNRME HERIKPNDVT FLSLLSACSH TGQTELGWKI YDTMINKHGI EAREEHLSCI IDMLARSGYL EEAYALIRSK EGIVSLSSST WGAFLDACRR 501: HGNVQLSKVA ATQLLSMEPR KPVNYINLAS VYAANGAWDN ALNTRKLMKE SGSCNKAPGY SLVY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)