AT3G19770.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.745 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar sorting protein 9 (VPS9) domain | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Guanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VPS9A; FUNCTIONS IN: Rho guanyl-nucleotide exchange factor activity; INVOLVED IN: cell plate assembly, transport, cell wall biogenesis, post-embryonic root development, embryo development; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6867742..6869114 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42361.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.64 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAQKELQKI NMYKAPRDKL VCILNCCKVI NNLLLNASIA SNENAPGADE FLPVLIYVTI KANPPQLHSN LLYIQRYRRE SKLVGEAAYF FTNILSAESF 101: ISNIDAKSIS LDEAEFEKNM ESARARISGL DSQTYQTGHG SAPPPRDEST LQKTQSLNPK RENTLFQSKS SDSLSGTNEL LNINSETPMK KAESISDLEN 201: KGATLLKDTE PSKVFQEYPY IFASAGDLRI GDVEGLLNSY KQLVFKYVCL TKGLGDGTSL APSSSPLQAS SGFNTSKESE DHRRSSSDVQ MTKETDRSVD 301: DLIRALHGEG EDVNNLSDVK HEEYGAMLVE GKDEERDSKV QGEVDAKDIE LMKQIPKREG DNSSSRPAED EDVGSKQPVT EASE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)