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AT3G19260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18643979 (2008): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LAG1 homologue 2
Curator
Summary (TAIR10)
LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.
Computational
Description (TAIR10)
LAG1 homologue 2 (LOH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1277 Blast hits to 1277 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 306; Plants - 183; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
BioGrid:6793eggNOG:COG5058eggNOG:KOG1607EMBL:AF198180
EMBL:AK118029EMBL:AP000419EMBL:AY084980EMBL:BT008341
EMBL:CP002686EnsemblPlants:AT3G19260EnsemblPlants:AT3G19260.1entrez:821460
GeneID:821460Genevisible:Q9LJK3GO:GO:0002238GO:GO:0005783
GO:GO:0005789GO:GO:0005794GO:GO:0005886GO:GO:0016021
GO:GO:0042759GO:GO:0046513GO:GO:0050291Gramene:AT3G19260.1
hmmpanther:PTHR12560hmmpanther:PTHR12560:SF12HOGENOM:HOG000239939InParanoid:Q9LJK3
InterPro:IPR006634InterPro:IPR016439iPTMnet:Q9LJK3KEGG:ath:AT3G19260
OMA:HEPWARDPANTHER:PTHR12560PaxDb:Q9LJK3Pfam:PF03798
Pfam:Q9LJK3Pfscan:PS50922PhylomeDB:Q9LJK3PRIDE:Q9LJK3
PRO:PR:Q9LJK3PROSITE:PS50922ProteinModelPortal:Q9LJK3Proteomes:UP000006548
Reactome:R-ATH-1660661RefSeq:NP_188557.1SMART:SM00724STRING:3702.AT3G19260.1
TAIR:AT3G19260tair10-symbols:LAG1 HOMOLOG 2tair10-symbols:LOH2TMHMM:TMhelix
UniGene:At.14736UniProt:Q9LJK3
Coordinates (TAIR10) chr3:-:6669448..6671257
Molecular Weight (calculated) 34700.70 Da
IEP (calculated) 7.49
GRAVY (calculated) 0.41
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MESVSSRGGD PVVKPSMEVW HFQIAVYFAF GFFFLRLVLD RYVFQRIALW LLSTGSAPIK LNDAATRAKI VKCKESLWKL LYYAACDFFV LQVIYHEPWA
101: RDIKLYFHGW PNQELKLSIK LYYMCQCGFY VYGVAALLAW ETRRKDFAVM MSHHVITIIL LSYSYLTSFF RIGAIILALH DASDVFMETA KIFKYSEKEF
201: GASVCFALFA VSWLLLRLIY FPFWIIRATS IELLDYLDMT SAEGTLMYYS FNTMLLMLLV FHIYWWYLIC AMIVRLLKNR GKVGEDIRSD SEDDDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)