AT3G19240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.532 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar import/degradation, Vid27-related protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT4G33400.1); Has 312 Blast hits to 307 proteins in 136 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 168; Plants - 82; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6664383..6666423 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72288.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.39 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTSQSREDR ISESDTESDS DYYEEEDEDQ YDDAKKQGSS SVSGTRPSDS SSSSGPTDSS SLDIEQKLKA LKLKYPSSSS VTPKMKNAVK LYRHIGGNTP 101: KAKWIVSDKM TSYKFVKTSS VDGEDIDDYD DCEESGEGGE SFWFLGVGTK VKARVSTDMQ LKMFGDQRRV DFVSNGVWAL KFLTDEDYRK FVTRFQDYLF 201: ENVYKIRASE ENRVKVYGKD FIGWANPEAA DDSMWEDAEA PPEEEETQGK RNTDLTEEFE EVANGGVQSL TLGALDNSFL VNDYGVQVYR NMERGIHGKG 301: VCVRFDSGNS KFGSGSSQTT PNKALLMRAE TNMMLMSPAK QGKPNSTGVK QLDIESGKIV TEWKFEKDGT EITMRDITND TKGSQLDPSE STFLGLDDNR 401: LCQWDMRDRR GIVQNIDSPI LEWTQGHQFS RGTNFQCFAT TGDGSIVVGS LDGKIRLYSK TSMRMAKTAF PGLGSPITHV DVSYDGKWIL GTTDTYLVLI 501: CTLFTDKNGL TKTGFSGRMG NKIPAPRLLK LTPLDSHLAG KDNKFHGGHF SWVTESGKQE RHIVATVGKF SVIWDLERVK NSAHECYRNQ QGLKSCYCYK 601: ILLKDESIVE SRFMHDNFSF SGNKSPEAPL VVATPLKVSS ISLSGKRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)