AT3G19230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G05990.1); Has 60731 Blast hits to 14722 proteins in 650 species: Archae - 18; Bacteria - 1872; Metazoa - 1598; Fungi - 177; Plants - 54234; Viruses - 0; Other Eukaryotes - 2832 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6661088..6663519 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57264.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.13 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLFFFLLLC FSISHALPPP RGFFLNCGSS SSTNLNEIEY TPDEGFISVG NTTTIKQKDL VPILSTLRYF PDKSSRKHCY NFPVAKTSKY LIRTTYYYGN 101: FDGKNNPPVF DQIIGGTKWS VVNTSEDYAK GQSSYYEIIV GVPGNRLSVC LAKNAHTLSS SPFISSLDVQ SLEDTMYNST DLGSYKLSLI ARNSFGGDGE 201: IISYPDDKYN RLWQPFSDQK HLTVTSRSRI NPSNFWNIPP AEAFVEGFTA SKGKPLELQW PPFPLPATKY YVALYFQDNR SPGPMSWRAF DVSVNGLSFL 301: RKLNVSTNGV MVYSGQWPLS GQTQITLTPA KDAPVGPFIN AGEVFQILPL GGTTNIKDAI AMEDLLESIM KPPVDWSGDP CLPRANSWTG LTCSKDKIAR 401: VISLNLTNLG LSGSLPPSIN KMTALKDLWL GKNKLTGPIP DLSPMTRLET LHLEDNQFTG AIPESLAKLP SLRTLSIKNN KLKGTIPSVL LQRKGLTIQA 501: SPENMPSTNN TGQFRVANS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)