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AT3G19070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT5G06800.2); Has 18617 Blast hits to 9609 proteins in 654 species: Archae - 8; Bacteria - 972; Metazoa - 4790; Fungi - 3902; Plants - 2478; Viruses - 331; Other Eukaryotes - 6136 (source: NCBI BLink).
Protein Annotations
EMBL:CP002686EnsemblPlants:AT3G19070EnsemblPlants:AT3G19070.1entrez:821441
Gene3D:1.10.10.60GeneID:821441GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT3G19070.1InParanoid:F4J9Z8
InterPro:IPR006447InterPro:IPR009057KEGG:ath:AT3G19070ncoils:Coil
OMA:QHTSEIVPaxDb:F4J9Z8ProteinModelPortal:F4J9Z8Proteomes:UP000006548
RefSeq:NP_188537.1SMR:F4J9Z8SUPFAM:SSF46689TAIR:AT3G19070
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.53382UniProt:F4J9Z8
Coordinates (TAIR10) chr3:+:6593773..6594977
Molecular Weight (calculated) 37714.00 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.49
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNLDEFLEE LSSIESHSQK IVKIDEHLKK LDEETKEDED EDAAKIIQDR STAREAEIAL LMDLRQNFLP PPSMSSSSLQ PPSSSTLAPS SSSSLQPPAP
101: LIDFFRSSVS YSHQPPSSST LATSSSPSLQ PPSMSSSSLQ PPASLREFFT SSVSYSHQPS SSSTLATSSF FPSSMPYSVR PPDSSDRPSL REFFPSSPSS
201: SIQPPESSSS KRARLSNIFP SPLSSSPSPF VNPFLRPQAQ EPTIPNFINP IPQISPGLPA LFPNPNPNPN PNPIPNPIRN PDLVWTNRLQ LVFDDAVVRL
301: GGLFSATPKA INELISEEGL TGDQIRSHLQ VLRDRQKAIA DKLALE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)