AT3G19040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : histone acetyltransferase of the TAFII250 family 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
histone acetyltransferase of the TAFII250 family 2 (HAF2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: histone acetylation, response to light stimulus; LOCATED IN: membrane, transcription factor TFIID complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: HAC13 protein (HAC13) (TAIR:AT1G32750.1); Has 14836 Blast hits to 8275 proteins in 670 species: Archae - 0; Bacteria - 64; Metazoa - 6564; Fungi - 2006; Plants - 2354; Viruses - 152; Other Eukaryotes - 3696 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6567157..6575282 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 202263.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1786 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MICRVDYGSN DEEYDGPELQ VVTEEDHLLP KREYLSAAFA LSGLNSRASV FDDEDYDEQG GQEKEHVPVE KSFDSEEREP VVLKEEKPVK HEKEASILGN 0101: KNQMDTGDVQ EELVVGLSEA TLDEKRVTPL PTLYLEDDGM VILQFSEIFA IQEPQKKRQK REIRCITYRD KYISMDISEL IEDDEEVLLK SHGRIDTHGK 0201: KTDQIQLDVP LPIRERSQLV KSGIVRDTTS ESREFTKLGR DSCIMGELLK QDLKDDNSSL CQSQLTMEVF PLDQQEWEHL ILWEISPQFS ANCCEGFKSG 0301: LESAGIMVQV RASNSVTEQE SLNVMNSGGQ TQGDNNNMLE PFFVNPLESF GSRGSQSTNE STNKSRHHPQ LLRLESQWDE DHYRENGDAG RENLKQLNSD 0401: ARGRLSGLAL QDRDMWDESW LDSIIWESDK DLSRSKLIFD LQDEQMIFEV PNNKERKYLQ LHAGSRIVSR SSKSKDGSFQ EGCGSNSGWQ FNISNDKFYM 0501: NGKSAQKLQG NAKKSTVHSL RVFHSAPAIK LQTMKIKLSN KERANFHRPK ALWYPHDNEL AIKQQKILPT QGSMTIVVKS LGGKGSLLTV GREESVSSLK 0601: AKASRKLDFK ETEAVKMFYM GKELEDEKSL AEQNVQPNSL VHLLRTKVHL WPWAQKLPGE NKSLRPPGAF KKKSDLSNQD GHVFLMEYCE ERPLMLSNAG 0701: MGANLCTYYQ KSSPEDQHGN LLRNQSDTLG SVIILEHGNK SPFLGEVHGG CSQSSVETNM YKAPVFPHRL QSTDYLLVRS AKGKLSLRRI NKIVAVGQQE 0801: PRMEIMSPAS KNLHAYLVNR MMAYVYREFK HRDRIAADEL SFSFSNISDA TVRKYMQVCS DLERDANGKA CWSKKRKFDK IPLGLNTLVA PEDVCSYESM 0901: LAGLFRLKHL GITRFTLPAS ISTALAQLPD ERIAAASHIA RELQITPWNL SSSFVTCATQ GRENIERLEI TGVGDPSGRG LGFSYVRVAP KSSAASEHKK 1001: KKAAACRGVP TVTGTDADPR RLSMEAAREV LLKFNVPDEI IAKQTQRHRT AMIRKISSEQ AASGGKVGPT TVGMFSRSQR MSFLQLQQQA REMCHEIWDR 1101: QRLSLSACDD DGNESENEAN SDLDSFVGDL EDLLDAEDGG EGEESNKSMN EKLDGVKGLK MRRWPSQVEK DEEIEDEAAE YVELCRLLMQ DENDKKKKKL 1201: KDVGEGIGSF PPPRSNFEPF IDKKYIATEP DASFLIVNES TVKHTKNVDK ATSKSPKDKQ VKEIGTPICQ MKKILKENQK VFMGKKTARA NFVCGACGQH 1301: GHMKTNKHCP KYRRNTESQP ESMDMKKSTG KPSSSDLSGE VWLTPIDNKK PAPKSATKIS VNEATKVGDS TSKTPGSSDV AAVSEIDSGT KLTSRKLKIS 1401: SKAKPKASKV ESDSPFHSLM PAYSRERGES ELHNPSVSGQ LLPSTETDQA ASSRYTTSVP QPSLSIDKDQ AESCRPHRVI WPPTGKEHSQ KKLVIKRLKE 1501: ITDHDSGSLE ETPQFESRKT KRMAELADFQ RQQRLRLSEN FLDWGPKDDR KWRKEQDIST ELHREGKVRR AYDDSTVSEE RSEIAESRRY REVIRSEREE 1601: EKRRKAKQKK KLQRGILENY PPRRNDGISS ESGQNINSLC VSDFERNRTE YAPQPKRRKK GQVGLANILE SIVDTLRVKE VNVSYLFLKP VTKKEAPNYL 1701: EIVKCPMDLS TIRDKVRRME YRDRQQFRHD VWQIKFNAHL YNDGRNLSIP PLADELLVKC DRLLDEYRDE LKEAEKGIVD SSDSLR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)