AT3G18670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.624 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 4772 Blast hits to 3121 proteins in 218 species: Archae - 7; Bacteria - 222; Metazoa - 2187; Fungi - 197; Plants - 1396; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6424135..6426471 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67905.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDTEKGYPRG FRAESLRPET GPRSFRFDSM QIDEAADLQK DEIRQENSTY LVLFKNIDSG ELEATKDFLD RNPEALTAIL TSNGDTPIHK AVLSGHIKIV 101: EEIIRRIHDP EQVLKIKNDN GYTALTYAAT GGIVRIAECL VNKCPGLVSV RNAKEHIPIV VASLYGHKHL VQYLYSHTPL SDLDPCDDSD EHKGKNGAML 201: VTNCIVDGLY CIALDLIQRY PKLAYTRDSD NDTAIMALAQ TPYAFPSVPR IIRRVYKLKL GHAQAKEILD CICQEIPKFD AAQQKNAGLN QALFKAVENG 301: IVEYIEEMMR HYPDIVWSKN SSGLNIFFYA VSQRQEKIFS LIYNIGAKKN ILATNWDIFH NNMLHHAAYR APASRLNLIP GAALQMQREL QWFKEVEKLV 401: QPKHRKMVNL KQKKTPKALF TDQHKDLVEQ GEKWMKETAT SCTVVAALIT TMMFSSAFTV PGGYRSDGMP LYIHQHRFKI FLISDAISLF TSCMSLLMFL 501: GILKSRYREE DFLRSLPTKL IVGLLALFLS MATMIVTFVV TLMTLVGEKI SWVSAQFMFL AVIPLGMFVV LQFPVLLEIF RATYCPNVFD KPRRVFKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)