AT3G18660.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : plant glycogenin-like starch initiation protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
plant glycogenin-like starch initiation protein 1 (PGSIP1); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: plant glycogenin-like starch initiation protein 2 (TAIR:AT1G77130.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6419211..6421959 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75490.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 654 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSPAAPAP TTTTGGDSRR RLSASIEAIC KRRFRRNSKG GGRSDMVKPF NIINFSTQDK NSSCCCFTKF QIVKLLLFIL LSATLFTIIY SPEAYHHSLS 101: HSSSRQDPRY FSDLDINWDD VTKTLENIEE GRTIGVLNFD SNEIQRWREV SKSKDNGDEE KVVVLNLDYA DKNVTWDALY PEWIDEEQET EVPVCPNIPN 201: IKVPTRRLDL IVVKLPCRKE GNWSRDVGRL HLQLAAATVA ASAKGFFRGH VFFVSRCFPI PNLFRCKDLV SRRGDVWLYK PNLDTLRDKL QLPVGSCELS 301: LPLGIQDRPS LGNPKREAYA TILHSAHVYV CGAIAAAQSI RQSGSTRDLV ILVDDNISGY HRSGLEAAGW QIRTIQRIRN PKAEKDAYNE WNYSKFRLWQ 401: LTDYDKIIFI DADLLILRNI DFLFSMPEIS ATGNNGTLFN SGVMVIEPCN CTFQLLMEHI NEIESYNGGD QGYLNEVFTW WHRIPKHMNF LKHFWIGDED 501: DAKRKKTELF GAEPPVLYVL HYLGMKPWLC YRDYDCNFNS DIFVEFATDI AHRKWWMVHD AMPQELHQFC YLRSKQKAQL EYDRRQAEAA NYADGHWKIR 601: VKDPRFKICI DKLCNWKSML RHWGESNWTD YESFVPTPPA ITVDRRSSLP GHNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)