AT3G18150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G03360.1); Has 2180 Blast hits to 2140 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2174; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6217929..6219500 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52505.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 456 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADDSATPGV RVPSHRYGRH YHRRKIKEAV DSISSLPDVI LQHILSFIPT KLAITTSLLS KRWRHVWCDT PSLSFNDYRL EAPFIDETLT RYTASKMMRF 101: HLHTSLINNV PHLESWIKFA MSRNVDHLSL DLWNQVANKF KFPDFFHINS SLKQLTVVLD FSDTMIAICL KKLYLSTCLL SDESMANILF GCPILESLTL 201: DHCGGLRVLD LSKSLRLRTL EINCNIWVPE LTAMQIVAPH THCLRLRNSK LPCSLVDVSS LKEAKLNICI DSFSKTIKAD FLQVTLLKML EKLHNVEKLT 301: LGGNFLQILS VAELRGVPFP MFKVKDLTLE TVIFQYVIPG IERVLQNSPD LKKLTLLTKD FYHKPGEYLG DHMDLEGFNL DQCWKSKYGV FWNKSCLDVE 401: SEHVVSFVEL MLKNTKALDK MVVLLEDHYV RFKEMVPRLS HNYNISIALY TFKPQS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)