AT3G17880.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetraticopeptide domain-containing thioredoxin | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. | ||||||||||||||||
| Computational Description (TAIR10) |
tetraticopeptide domain-containing thioredoxin (TDX); FUNCTIONS IN: protein binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: HSP70-interacting protein 1 (TAIR:AT4G22670.1); Has 25327 Blast hits to 23050 proteins in 2977 species: Archae - 386; Bacteria - 12482; Metazoa - 3860; Fungi - 1433; Plants - 2443; Viruses - 7; Other Eukaryotes - 4716 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6123534..6126113 | ||||||||||||||||
| Molecular Weight (calculated) | 41912.40 Da | ||||||||||||||||
| IEP (calculated) | 5.74 | ||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDAIQVAEL RRFVEQLKLN PSILHDPSLV FFKEYLRSLG AQVPKIEKTA ETKPSFSPKH DDDDDDIMES DVELDNSDVV EPDNEPPQPM GDPTAEVTDE 101: NRDDAQSEKS KAMEAISDGR FDEAIEHLTK AVMLNPTSAI LYATRASVFL KVKKPNAAIR DANVALQFNS DSAKGYKSRG MAKAMLGQWE EAAADLHVAS 201: KLDYDEEIGT MLKKVEPNAK RIEEHRRKYQ RLRKEKELQR AERERRKQQE AQEREAQAAL NDGEVISIHS TSELEAKTKA AKKASRLLIL YFTATWCGPC 301: RYMSPLYSNL ATQHSRVVFL KVDIDKANDV AASWNISSVP TFCFIRDGKE VDKVVGADKG SLEQKIAQHS SSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)