AT3G17720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.809 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, glutamate decarboxylase activity; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, cellular amino acid metabolic process; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 5 (TAIR:AT3G17760.2); Has 1964 Blast hits to 1964 proteins in 682 species: Archae - 111; Bacteria - 1264; Metazoa - 55; Fungi - 271; Plants - 200; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6062446..6063483 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21390.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 194 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGTGQKLNI RRRVGEVNSL SFCCLSPTPT SLDNRCVNMI ANLFHAPVGQ DEAVISCGIV ASSESAGLAF KMKWQHRRKA QGLPIDKPNI VTGVNVQVCW 101: EKFARYFEVE LKEVKLSEDY YVMDPAKAVE MVDENSICVA AILGSTFTGE FEYVKLLNDL LAEKNAKTAW ETPIHVDAAS GGFIASMGEE YQCQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)