AT3G17660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.873 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARF-GAP domain 15 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARF-GAP domain 15 (AGD15); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 5 (TAIR:AT5G54310.1); Has 3532 Blast hits to 3530 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 1821; Fungi - 633; Plants - 551; Viruses - 0; Other Eukaryotes - 527 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6037717..6039092 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26211.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 232 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRKASVSKE LNAKHSKILE ALLKHPDNRE CADCRSKAPR WASVNLGIFI CMQCSGIHRS LGVHISQVRS ITLDTWLPDQ VAFMKSTGNA KGNEYWESEL 101: PQHFERSSSD TFIRAKYSEK RWVSPGAIQP APIVSQLSCK VSHLVESGYK PETPKKARTL SLDEEILLHH VLQVTPPETR TRAGSVDMKE NVYVVPLPEF 201: KKPNQKNENF SSEVNQNRRT TIAPPSSWAT FD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)