AT3G17650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YELLOW STRIPE like 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana metal-nicotianamine transporter YSL5 | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 5 (YSL5); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 8 (TAIR:AT1G48370.1); Has 1817 Blast hits to 1744 proteins in 553 species: Archae - 19; Bacteria - 918; Metazoa - 0; Fungi - 247; Plants - 486; Viruses - 1; Other Eukaryotes - 146 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6034307..6037087 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78857.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 714 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRKGVLNPDR DRQIVEHELQ ETGFSPETEK VKNKNFEEDE EEEDESVEKI FESREVPSWK KQLTVRAFVV SFMLSILFSF IVMKLNLTTG IIPSLNVSAG 101: LLGFFFVKTW TKMLHRSGLL KQPFTRQENT VIQTCVVASS GIAFSGGFGT YLFGMSERIA TQSGDVSRGV KDPSLGWIIG FLFVVSFLGL FSVVPLRKIM 201: VIDFKLTYPS GTATAHLINS FHTPQGAKLA KKQVRVLGKF FSLSFFWSFF QWFFTGGENC GFSNFPTFGL KAYQYKFYFD FSATYVGVGM ICPYIINISV 301: LLGGILSWGI MWPLIETKKG DWFPDNVPSS SMHGLQAYKV FIAVAIILGD GLYNFCKVLS RTLSGLFVQL RGPTTSISRT SFTLEEDPHA SPLSPKQSYD 401: DQRRTRFFLK DQIPTWFAVG GYITIAATST AILPHMFHQL RWYYILVIYI CAPVLAFCNA YGAGLTDWSL ASTYGKLAIF TIGAWAGSEH GGMLAGLAAC 501: GVMMNIVSTA SDLTQDFKTG YLTLSSPKSM FVSQVIGTAM GCVVSPCVFW LFYKAFDDLG LPNTEYPAPF ATVYRSMAKL GVEGVASLPR ECLVLCYAFF 601: GVAILVNIVK DSLHSNWGRF IPLPMAMAIP FFLGPYFAID MCVGSLILFI WERVDAAKAE AFGTAVASGL ICGDGIWSLP SSVLAIAGVN PPVCMKFLSS 701: ATNSKVDNFL KGSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)