AT3G17520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant protein (LEA) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant protein (LEA) family protein; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell, seed, leaf; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible, seed development stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT2G18340.1); Has 42102 Blast hits to 23885 proteins in 2451 species: Archae - 240; Bacteria - 12810; Metazoa - 10748; Fungi - 3745; Plants - 3219; Viruses - 271; Other Eukaryotes - 11069 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5999462..6000358 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32560.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.05 | ||||||||||||||||||||||||||||||||
| Length | 298 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLERKVYGL VMVSLVLMAI ATMCCVQATI EEEAAKDESW TDWAKEKIGL KHEDNIQPTH TTTTVQDDAW RASQKAEDAK EAAKRKAEEA VGAAKEKAGS 101: AYETAKSKVE EGLASVKDKA SQSYDSAGQV KDDVSHKSKQ VKDSLSGDEN DESWTGWAKE KIGIKNEDIN SPNLGETVSE KAKEAKEAAK RKAGDAKEKL 201: AETVETAKEK ASDMTSAAKE KAEKLKEEAE RESKSAKEKI KESYETAKSK ADETLESAKD KASQSYDSAA RKSEEAKDTV SHKSKRVKES LTDDDAEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)