AT3G17340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.1); Has 9009 Blast hits to 4794 proteins in 333 species: Archae - 21; Bacteria - 366; Metazoa - 3391; Fungi - 1120; Plants - 417; Viruses - 382; Other Eukaryotes - 3312 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5920613..5926846 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121359.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.43 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||
| Length | 1090 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFVGDDDSVQ IVRLLDQTLT SIDGVSVREA TEALDLLSTK LPHFPYRLLS IASGSENPSL KVAAATYLKN FTRKSTGTEG TISEVSKEFK DQLLLALLQA 0101: EPAVLKVLLE LLHIVVVSEF VRKNAWPKLV PELRSAIEKS SLISSSNSSW STVNALMVLL TVVKPFQYFL QPKLAKEPVP QQLESIAREI LVPLVSVLHR 0201: LIDKALTTHG WDELELEKTL HIICKCLYFS VKSHMPSALS PLLGSFCQDM IRILDSLSFD WSVTPSDGYL IRSKAGKRSL LLFCTLVSRH RKYSDKLVPE 0301: IINCSMKIVK HSSNIGKLGC LTERIISLAF DVISRVMEIG PGWRLLSPHF SFLLDSAIFP ALVLNERDIS EWEEDADEFI RKNLPSELEE ISGWRDDLFT 0401: ARKSAMNLLC VLAMSKGPPV STTNTASPAA CKRKKGEKNR GNNQRCMGDL LVLPFLSKFP VPSKSYKLDA STSAAYFGVL MAYGSLQEFI QEQNPEYVAS 0501: FVRTRVLPIY STPDCSPYLV ASANWVLGEL ASCLPEEMNA DVFSSLLKAL AMPDQVEISC YPVRFSAAGG IGSLLENEYQ PPELLPLLQF ITGKIGNEED 0601: EDSMLFQLLK SVVESGNQDI AMHIPYIVSS LVSNMLKFMH PSEDPWSQAI LGGLETLAAM TQTYESSKPE ADEENNQATE IWLTGQGTIS KALSALLQHA 0701: WLATDVPPTS CIDHLSTMLR FIVIAATNCN VFVELRLTDL LIVWADILAS WNGWEESEDL SVFDCIEEVV GINNKYGFRS FLFRDIPSPP AMPVRPRSVV 0801: ESIGSFVSKA ILEYPSATRR ACSCVHTLLY VPDYSSDIEG VGKSLAMVFA ESAFSHFLAL REKPCTLWRP LLLAISSCYI SYSDIVEGVL EKVISGGFEL 0901: WVSSLAFSYS LTCDDSPSVV SEVKLYVMTL VKVIEHLLDV RHGNATDDLA RKCFVSLMEA SRRLKEVNEE TDDDEDDGEP GEEETESEET DSNDEDSESD 1001: ECEETEEEFL ERYAKVAAEL EDSEVIEEAD EEDDDHEIDL GSLNEIDPQK LVLSLMEKHH QKVINLVPSE AISTFLNSFP IYTSLFSKCL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)