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AT3G17320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G16740.1); Has 1386 Blast hits to 1314 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1384; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
EMBL:AB022216EMBL:CP002686EnsemblPlants:AT3G17320EnsemblPlants:AT3G17320.1
entrez:820995GeneID:820995Gramene:AT3G17320.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q9LUT9InterPro:IPR001810
InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451KEGG:ath:AT3G17320
OMA:KEFHAIMPaxDb:Q9LUT9Pfam:PF00646Pfam:PF07734
Pfam:Q9LUT9Pfscan:PS50181PhylomeDB:Q9LUT9PRIDE:Q9LUT9
PRO:PR:Q9LUT9PROSITE:PS50181ProteinModelPortal:Q9LUT9Proteomes:UP000006548
RefSeq:NP_188358.1SMART:SM00256SMR:Q9LUT9SUPFAM:0047741
SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT3G17320TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.66538UniProt:Q9LUT9
Coordinates (TAIR10) chr3:-:5915427..5916656
Molecular Weight (calculated) 47291.90 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.26
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKISDLPRD LAEEVLSRVP VTYLRAIRFT CKKWNTLTKR RSFTKKLIGQ EKAEAKVKEF HAIMTLNSRL HLMSVNLDGI HKDENVESSI KQKGKLISLT
101: VADPDRIVIS QVYHCDGLLL CITNEINSRL VVWNPYSGQT RWIEPRTSYR EWDIYALGYE SKNNAKRSYK ILRYLDAYED MGDMSVEPRT RVCEFEIYSL
201: DTNSWKVIEV TTDWDLCFLH RGVTLKGNTY WFAREKIPPP PRERVIEDIP LGEAEINVEI PSFLLCFDFT IEKFGSRLPL PFRPCVDDTI TLSSVREEKL
301: AVLYQRWDIT WTGIWISNKI EPNAVSWSKL FFPMGRIRPL EAASGTFFVD EENKLVVLFD KGESILNPTR NTAYIVGEDG YIKPVDLGES VHKYCFPLAC
401: SYVPSSVQI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)