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AT3G17210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : heat stable protein 1
Curator
Summary (TAIR10)
Encodes a heat stable protein with antimicrobial and antifungal activity.
Computational
Description (TAIR10)
heat stable protein 1 (HS1); INVOLVED IN: defense response to fungus, defense response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Stress responsive alpha-beta barrel (InterPro:IPR013097), Dimeric alpha-beta barrel (InterPro:IPR011008); BEST Arabidopsis thaliana protein match is: Stress responsive A/B Barrel Domain (TAIR:AT5G22580.1); Has 431 Blast hits to 430 proteins in 120 species: Archae - 0; Bacteria - 167; Metazoa - 0; Fungi - 40; Plants - 173; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Protein Annotations
BioGrid:6313eggNOG:ENOG410IYZVeggNOG:ENOG4111U5XEMBL:AB022216
EMBL:AF370462EMBL:AK230465EMBL:AY064673EMBL:AY086696
EMBL:CP002686EnsemblPlants:AT3G17210EnsemblPlants:AT3G17210.1entrez:820980
EvolutionaryTrace:Q9LUV2GeneID:820980Genevisible:Q9LUV2GO:GO:0005829
GO:GO:0005886GO:GO:0042742GO:GO:0046872GO:GO:0050832
Gramene:AT3G17210.1hmmpanther:PTHR33178HOGENOM:HOG000245859InParanoid:Q9LUV2
IntAct:Q9LUV2InterPro:IPR011008InterPro:IPR013097KEGG:ath:AT3G17210
OMA:HVEFATIPaxDb:Q9LUV2PDB:1Q4RPDB:1Q53
PDB:2Q3PPDBsum:1Q4RPDBsum:1Q53PDBsum:2Q3P
Pfam:PF07876Pfam:Q9LUV2Pfscan:PS51502PhylomeDB:Q9LUV2
PRIDE:Q9LUV2PRO:PR:Q9LUV2PROSITE:PS51502ProteinModelPortal:Q9LUV2
Proteomes:UP000006548RefSeq:NP_566569.1SMART:SM00886SMR:Q9LUV2
STRING:3702.AT3G17210.1SUPFAM:SSF54909TAIR:AT3G17210tair10-symbols:ATHS1
tair10-symbols:HS1UniGene:At.25332UniProt:Q9LUV2
Coordinates (TAIR10) chr3:+:5882318..5882896
Molecular Weight (calculated) 12184.60 Da
IEP (calculated) 5.51
GRAVY (calculated) -0.01
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEAKGPVKH VLLASFKDGV SPEKIEELIK GYANLVNLIE PMKAFHWGKD VSIENLHQGY THIFESTFES KEAVAEYIAH PAHVEFATIF LGSLDKVLVI
101: DYKPTSVSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)