AT3G17040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : high chlorophyll fluorescent 107 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast, plasma membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1); Has 8355 Blast hits to 4834 proteins in 935 species: Archae - 387; Bacteria - 2714; Metazoa - 1907; Fungi - 1281; Plants - 751; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5809378..5812605 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73474.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHFFFVPNSS SSSPSPANTS SFSLSFLTPQ IPENLCKSPT KIHIGTHGIS GQSFLSHPTF SSKNTYLYAV VDRSSSGVFS PQKESANGEG EESNTEEGVL 101: VVRRPLLENS DKESSEEEGK KYPARIDAGL SNIAKKMPIF EPERSESSSS SSAAAAARAQ ERPLAVNLDL SLYKAKVLAR NFRYKDAEKI LEKCIAYWPE 201: DGRPYVALGK ILSKQSKLAE ARILYEKGCQ STQGENSYIW QCWAVLENRL GNVRRARELF DAATVADKKH VAAWHGWANL EIKQGNISKA RNLLAKGLKF 301: CGRNEYIYQT LALLEAKAGR YEQARYLFKQ ATICNSRSCA SWLAWAQLEI QQERYPAARK LFEKAVQASP KNRFAWHVWG VFEAGVGNVE RGRKLLKIGH 401: ALNPRDPVLL QSLGLLEYKH SSANLARALL RRASELDPRH QPVWIAWGWM EWKEGNTTTA RELYQRALSI DANTESASRC LQAWGVLEQR AGNLSAARRL 501: FRSSLNINSQ SYVTWMTWAQ LEEDQGDTER AEEIRNLYFQ QRTEVVDDAS WVTGFLDIID PALDTVKRLL NFGQNNDNNR LTTTLRNMNR TKDSQSNQQP 601: ESSAGREDIE TGSGFNLDVF LRSKLSLDPL KLDVNLDSKR LERFTRGRIN GA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)