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AT3G16980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RNA polymerases M/15 Kd subunit
Curator
Summary (TAIR10)
One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265
Computational
Description (TAIR10)
NRPB9A; FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: RNA polymerases M/15 Kd subunit (TAIR:AT4G16265.1); Has 955 Blast hits to 950 proteins in 294 species: Archae - 163; Bacteria - 0; Metazoa - 246; Fungi - 231; Plants - 130; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).
Protein Annotations
BioGrid:6287eggNOG:COG1594eggNOG:KOG2691EMBL:AB026636
EMBL:BT012109EMBL:BT012363EMBL:CP002686EnsemblPlants:AT3G16980
EnsemblPlants:AT3G16980.1entrez:820954GeneID:820954Genevisible:Q6NLH0
GO:GO:0000419GO:GO:0001193GO:GO:0003677GO:GO:0003899
GO:GO:0005665GO:GO:0005730GO:GO:0006283GO:GO:0006367
GO:GO:0008270Gramene:AT3G16980.1hmmpanther:PTHR11239hmmpanther:PTHR11239:SF15
HOGENOM:HOG000228134InParanoid:Q6NLH0IntAct:Q6NLH0InterPro:IPR001222
InterPro:IPR001529InterPro:IPR012164InterPro:IPR019761KEGG:ath:AT3G16980
KO:K03017OMA:QLADSNCPaxDb:Q6NLH0Pfam:PF01096
Pfam:PF02150Pfam:Q6NLH0Pfscan:PS51133PhylomeDB:Q6NLH0
PIRSF:PIRSF005586PRIDE:Q6NLH0PRO:PR:Q6NLH0PROSITE:PS01030
PROSITE:PS51133ProteinModelPortal:Q6NLH0Proteomes:UP000006548Reactome:R-ATH-112382
Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165
Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_188323.1scanprosite:PS01030
SMART:SM00440SMART:SM00661SMR:Q6NLH0STRING:3702.AT3G16980.1
SUPFAM:SSF57783TAIR:AT3G16980tair10-symbols:NRPB9Atair10-symbols:NRPD9A
tair10-symbols:NRPE9AUniGene:At.73939UniProt:Q6NLH0
Coordinates (TAIR10) chr3:+:5794526..5795699
Molecular Weight (calculated) 13276.80 Da
IEP (calculated) 7.64
GRAVY (calculated) -0.65
Length 114 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)