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AT3G16770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ethylene-responsive element binding protein
Curator
Summary (TAIR10)
Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3.
Computational
Description (TAIR10)
ethylene-responsive element binding protein (EBP); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 5957 Blast hits to 5752 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5929; Viruses - 4; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
BioGrid:6263eggNOG:ENOG410IYVIeggNOG:ENOG41113EYEMBL:AB022217
EMBL:AF003096EMBL:AY035100EMBL:AY059917EMBL:AY087488
EMBL:AY142562EMBL:CP002686EMBL:Y09942EMBL:Z37504
EnsemblPlants:AT3G16770EnsemblPlants:AT3G16770.1entrez:820929Gene3D:3.30.730.10
GeneID:820929Genevisible:P42736GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0006351
GO:GO:0008219GO:GO:0009723GO:GO:0009735GO:GO:0009753
GO:GO:0009873GO:GO:0010286GO:GO:0045893GO:GO:0051707
Gramene:AT3G16770.1hmmpanther:PTHR31190hmmpanther:PTHR31190:SF18HOGENOM:HOG000237624
InParanoid:P42736IntAct:P42736InterPro:IPR001471InterPro:IPR016177
iPTMnet:P42736KEGG:ath:AT3G16770KO:K09286OMA:SAADDFW
PaxDb:P42736Pfam:P42736Pfam:PF00847Pfscan:PS51032
PhylomeDB:P42736PRINTS:PR00367PRO:PR:P42736PROSITE:PS51032
ProteinModelPortal:P42736Proteomes:UP000006548RefSeq:NP_188299.1SMART:SM00380
SMR:P42736STRING:3702.AT3G16770.1SUPFAM:SSF54171TAIR:AT3G16770
tair10-symbols:ATEBPtair10-symbols:EBPtair10-symbols:ERF72tair10-symbols:RAP2.3
UniGene:At.24773UniProt:P42736
Coordinates (TAIR10) chr3:+:5705784..5706768
Molecular Weight (calculated) 27759.40 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.73
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)